PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G039000.1.p
Common NamePRUPE_ppa007968mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 351aa    MW: 38779 Da    PI: 10.1507
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G039000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.79.4e-1648131186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v  L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Prupe.2G039000.1.p  48 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 131
                         5*************************************854444555566679****************99997......4699999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2046131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDNETNQENP SLPPNNYTST TKELESPRSK PQQPLGVGGS SDRLKRDEWS EGAVSSLLEA  60
YETKWVLRNR AKLKGHDWED VARHVSSRAN CTKSPKTQTQ CKNKIESMKK RYRSESATAD  120
GSSWPLYPRL DLLLRGSGPS PTAASAAATV TAAAIPPPPP PPPLPVQLPP PPPQNNHPLM  180
LLEPSVSLPP QPPPTAPPQP IGTAQNSYGS NGVDHRVAKE DGMGMKLSDH ASDKNPLEID  240
SSTPALYSDK EKLRSKRMKR KIEKKKRRRR EEVEIAESIR WLAEVVVRSE QARMDTMREI  300
ERMRVEAEAK RGEMDLKRTE IIANTQLEIA RLFAAGVGKG VDSSLRIGRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268KKKRRR
2263269KKKRRRR
3264269KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532031e-165AB853203.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH155.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218233.10.0hypothetical protein PRUPE_ppa007968mg
TrEMBLM5X0480.0M5X048_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s06580.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-97sequence-specific DNA binding transcription factors